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Chpf2 chondroitin polymerizing factor 2 [ Perognathus longimembris pacificus (Pacific pocket mouse) ]

Gene ID: 125347327, updated on 22-Mar-2024

Summary

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Gene symbol
Chpf2
Gene description
chondroitin polymerizing factor 2
See related
EnsemblRapid:ENSPLPG00005002733
Gene type
protein coding
RefSeq status
MODEL
Organism
Perognathus longimembris pacificus (sub-species: pacificus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Perognathinae; Perognathus
Orthologs
human mouse all
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Genomic context

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See Chpf2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM2315922v1 (GCF_023159225.1) 2 NC_063162.1 (150726256..150743011)

Chromosome 2 - NC_063162.1Genomic Context describing neighboring genes Neighboring gene IQ motif containing with AAA domain 1 like Neighboring gene ATP binding cassette subfamily F member 2 Neighboring gene basic proline-rich protein-like Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D3 Neighboring gene negative regulator of ubiquitin like proteins 1 Neighboring gene crystallin gamma N

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063162.1 Chromosome 2 Reference ASM2315922v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perognathus longimembris pacificus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2315922v1

Genomic

  1. NC_063162.1 Reference ASM2315922v1

    Range
    150726256..150743011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048340481.1 → XP_048196438.1  chondroitin sulfate glucuronyltransferase isoform X1

    Related
    ENSPLPP00005003146.1, ENSPLPT00005003529.1

  2. XM_048340482.1 → XP_048196439.1  chondroitin sulfate glucuronyltransferase isoform X2

Nucleotide Protein
Heading Accession and Version

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