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Sgcd sarcoglycan delta [ Perognathus longimembris pacificus (Pacific pocket mouse) ]

Gene ID: 125342157, updated on 22-Mar-2024

Summary

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Gene symbol
Sgcd
Gene description
sarcoglycan delta
See related
EnsemblRapid:ENSPLPG00005011661
Gene type
protein coding
RefSeq status
MODEL
Organism
Perognathus longimembris pacificus (sub-species: pacificus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Perognathinae; Perognathus
Orthologs
human mouse all
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Genomic context

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See Sgcd in Genome Data Viewer
Location:
chromosome: 25
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM2315922v1 (GCF_023159225.1) 25 NC_063185.1 (17511489..17976302)

Chromosome 25 - NC_063185.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD95 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene receptor for activated C kinase 1 Neighboring gene uncharacterized LOC125342158 Neighboring gene uncharacterized LOC125342156 Neighboring gene T cell immunoglobulin and mucin domain containing 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063185.1 Chromosome 25 Reference ASM2315922v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perognathus longimembris pacificus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2315922v1

Genomic

  1. NC_063185.1 Reference ASM2315922v1

    Range
    17511489..17976302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048334294.1 → XP_048190251.1  delta-sarcoglycan isoform X2

  2. XM_048334295.1 → XP_048190252.1  delta-sarcoglycan isoform X2

  3. XM_048334296.1 → XP_048190253.1  delta-sarcoglycan isoform X2

  4. XM_048334293.1 → XP_048190250.1  delta-sarcoglycan isoform X1

    Related
    ENSPLPP00005013647.1, ENSPLPT00005015294.1

  5. XM_048334297.1 → XP_048190254.1  delta-sarcoglycan isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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