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Capn3 calpain 3 [ Perognathus longimembris pacificus (Pacific pocket mouse) ]

Gene ID: 125340953, updated on 22-Mar-2024

Summary

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Gene symbol
Capn3
Gene description
calpain 3
See related
EnsemblRapid:ENSPLPG00005010219
Gene type
protein coding
RefSeq status
MODEL
Organism
Perognathus longimembris pacificus (sub-species: pacificus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Perognathinae; Perognathus
Orthologs
human mouse all
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Genomic context

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See Capn3 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
26
Annotation release Status Assembly Chr Location
100 current ASM2315922v1 (GCF_023159225.1) 23 NC_063183.1 (31587572..31616910, complement)

Chromosome 23 - NC_063183.1Genomic Context describing neighboring genes Neighboring gene synaptosome associated protein 23 Neighboring gene zinc finger protein 106 Neighboring gene glucosidase alpha, neutral C Neighboring gene transmembrane protein 87A Neighboring gene VPS39 subunit of HOPS complex

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063183.1 Chromosome 23 Reference ASM2315922v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perognathus longimembris pacificus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2315922v1

Genomic

  1. NC_063183.1 Reference ASM2315922v1

    Range
    31587572..31616910 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048332890.1 → XP_048188847.1  calpain-3 isoform X1

  2. XM_048332893.1 → XP_048188850.1  calpain-3 isoform X3

  3. XM_048332892.1 → XP_048188849.1  calpain-3 isoform X2

  4. XM_048332894.1 → XP_048188851.1  calpain-3 isoform X4

  5. XM_048332889.1 → XP_048188846.1  calpain-3 isoform X1

    Related
    ENSPLPP00005011950.1, ENSPLPT00005013419.1

  6. XM_048332896.1 → XP_048188853.1  calpain-3 isoform X6

  7. XM_048332895.1 → XP_048188852.1  calpain-3 isoform X5

    Related
    ENSPLPP00005011936.1, ENSPLPT00005013404.1
Nucleotide Protein
Heading Accession and Version

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