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LOC125312414 uncharacterized LOC125312414 [ Homo sapiens (human) ]

Gene ID: 125312414, updated on 10-Oct-2023

Summary

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Gene symbol
LOC125312414
Gene description
uncharacterized LOC125312414
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1q24.2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (168400191..168495640, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (167752512..167850756, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene dynactin subunit 5 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:168356076-168356657 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:168356658-168357238 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:168357239-168357820 Neighboring gene microRNA 557 Neighboring gene uncharacterized LOC100505918 Neighboring gene OCT4 hESC enhancer GRCh37_chr1:168397241-168397782 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1544 Neighboring gene uncharacterized LOC101928565 Neighboring gene QRSL1 pseudogene 1 Neighboring gene MPRA-validated peak443 silencer Neighboring gene MPRA-validated peak444 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:168479196-168480395 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:168481645-168482844 Neighboring gene ribosomal protein L7a pseudogene 19 Neighboring gene X-C motif chemokine ligand 2 Neighboring gene ribosomal protein L7a pseudogene 21 Neighboring gene X-C motif chemokine ligand 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_176084.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022100, AL023755

  2. NR_176085.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022100, AL023755

  3. NR_176086.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022100, AL023755

  4. NR_176087.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022100, AL023755

  5. NR_176088.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022100, AL023755

  6. NR_176089.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022100, AL023755

  7. NR_176090.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022100, AL023755

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    168400191..168495640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    167752512..167850756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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