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sseF secretion system effector [ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ]

Gene ID: 1252922, updated on 6-Jun-2024

Summary

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Gene symbol
sseF
Gene description
secretion system effector
Locus tag
STM1404
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (strain: LT2, serovar: Typhimurium, sub-species: enterica, culture-collection: ATCC:700720, culture-collection: SGSC:1412, type-material: type strain of Salmonella enterica)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella
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Genomic context

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Sequence:
NC_003197.2 (1487962..1488748)

NC_003197.2Genomic Context describing neighboring genes Neighboring gene secretion system effector Neighboring gene secretion system effector Neighboring gene secretion system chaparone Neighboring gene secretion system effector Neighboring gene secretion system apparatus Neighboring gene secretion system apparatus

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003197.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional dissection of SseF, a membrane-integral effector protein of intracellular Salmonella enterica. Müller P, et al. PLoS One, 2012. PMID 22529968, Free PMC Article
  2. Salmonella Effectors SseF and SseG Interact with Mammalian Protein ACBD3 (GCP60) To Anchor Salmonella-Containing Vacuoles at the Golgi Network. Yu XJ, et al. mBio, 2016 Jul 12. PMID 27406559, Free PMC Article
  3. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. McClelland M, et al. Nature, 2001 Oct 25. PMID 11677609

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The authors propose a model in which interaction between Salmonella enterica serovar Typhimurium SseF and SseG enables both proteins to bind ACBD3, thereby anchoring Salmonella-containing vacuoles at the Golgi network and facilitating bacterial replication.
    Title: Salmonella Effectors SseF and SseG Interact with Mammalian Protein ACBD3 (GCP60) To Anchor Salmonella-Containing Vacuoles at the Golgi Network.
  2. A detailed mutational analysis of SseF that identifies a short hydrophobic motif as functionally essential.
    Title: Functional dissection of SseF, a membrane-integral effector protein of intracellular Salmonella enterica.
Submit: New GeneRIF Correction

General gene information

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regulatory

  • Loc: 1487962-1487967 regulatory_class = ribosome_binding_site
  • Loc: 1488741-1488746 regulatory_class = ribosome_binding_site

General protein information

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Preferred Names
secretion system effector
NP_460369.1
  • SseF (gi|3377868)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003197.2 Reference assembly

    Range
    1487962..1488748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_460369.1 secretion system effector [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

    See identical proteins and their annotated locations for NP_460369.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5U0FA02, A0A5V5G4H9, A0A5Z0TRZ7, A0A603KC46, A0A6M3NQ86, A0A718RZR7, A0A722FPQ1, A0A722P5Q4, A0A759XIY8
    Conserved Domains (1) summary
    PRK15358
    Location:22 → 260
    PRK15358; type III secretion systems effector SseF
Nucleotide Protein
Heading Accession and Version

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Research Materials