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hspa1b heat shock protein family A (Hsp70) member 1B [ Megalobrama amblycephala (Wuchang bream) ]

Gene ID: 125279821, updated on 22-Mar-2024

Summary

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Gene symbol
hspa1b
Gene description
heat shock protein family A (Hsp70) member 1B
See related
EnsemblRapid:ENSMAYG00005013662
Gene type
protein coding
RefSeq status
MODEL
Organism
Megalobrama amblycephala
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama
Orthologs
zebrafish all
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Genomic context

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See hspa1b in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
2
Annotation release Status Assembly LG Location
100 current ASM1881202v1 (GCF_018812025.1) LG12 NC_063055.1 (24463695..24467448, complement)

Linkage Group LG12 - NC_063055.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 member 17 Neighboring gene potassium voltage-gated channel, Shaw-related subfamily, member 4 Neighboring gene adenosylhomocysteinase-like 1 Neighboring gene nuclear transcription factor Y, alpha, like Neighboring gene neugrin, neurite outgrowth associated

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063055.1 Chromosome LG12 Reference ASM1881202v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heat shock protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables misfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to unfolded protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chaperone cofactor-dependent protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in blood microparticle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat shock 70 kDa protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megalobrama amblycephala Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1881202v1 Primary Assembly

Genomic

  1. NC_063055.1 Reference ASM1881202v1 Primary Assembly

    Range
    24463695..24467448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048209872.1 → XP_048065829.1  heat shock 70 kDa protein-like

    Related
    ENSMAYP00005029935.1, ENSMAYT00005032749.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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