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cacng2a calcium channel, voltage-dependent, gamma subunit 2a [ Megalobrama amblycephala (Wuchang bream) ]

Gene ID: 125276133, updated on 22-Mar-2024

Summary

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Gene symbol
cacng2a
Gene description
calcium channel, voltage-dependent, gamma subunit 2a
See related
EnsemblRapid:ENSMAYG00005007125
Gene type
protein coding
RefSeq status
MODEL
Organism
Megalobrama amblycephala
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama
Orthologs
human zebrafish all
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Genomic context

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See cacng2a in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
4
Annotation release Status Assembly LG Location
100 current ASM1881202v1 (GCF_018812025.1) LG1 NC_063044.1 (57532337..57625147)

Linkage Group LG1 - NC_063044.1Genomic Context describing neighboring genes Neighboring gene GTPase IMAP family member 4 Neighboring gene apolipoprotein L Neighboring gene uncharacterized LOC125276139 Neighboring gene small nucleolar RNA SNORA54 Neighboring gene small nucleolar RNA U83B Neighboring gene ribosomal protein L3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063044.1 Chromosome LG1 Reference ASM1881202v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables channel regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter receptor internalization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter receptor transport, postsynaptic endosome to lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission, glutamatergic IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynaptic neurotransmitter receptor diffusion trapping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of AMPA receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmission of nerve impulse IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AMPA glutamate receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium channel, voltage-dependent, gamma subunit 2a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megalobrama amblycephala Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1881202v1 Primary Assembly

Genomic

  1. NC_063044.1 Reference ASM1881202v1 Primary Assembly

    Range
    57532337..57625147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048203621.1 → XP_048059578.1  calcium channel, voltage-dependent, gamma subunit 2a

    Related
    ENSMAYP00005013976.1, ENSMAYT00005015997.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases