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LOC125274417 voltage-dependent T-type calcium channel subunit alpha-1I-like [ Megalobrama amblycephala (Wuchang bream) ]

Gene ID: 125274417, updated on 30-Nov-2023

Summary

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Gene symbol
LOC125274417
Gene description
voltage-dependent T-type calcium channel subunit alpha-1I-like
See related
EnsemblRapid:ENSMAYG00005007971
Gene type
protein coding
RefSeq status
MODEL
Organism
Megalobrama amblycephala
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama
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Genomic context

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See LOC125274417 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
35
Annotation release Status Assembly LG Location
100 current ASM1881202v1 (GCF_018812025.1) LG8 NC_063051.1 (34427552..34482595, complement)

Linkage Group LG8 - NC_063051.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125274415 Neighboring gene urotensin-2 receptor 4 Neighboring gene GRB2 related adaptor protein 2b Neighboring gene family with sequence similarity 83 member Fb

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063051.1 Chromosome LG8 Reference ASM1881202v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables low voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated sodium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane depolarization during action potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuronal action potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated sodium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent T-type calcium channel subunit alpha-1I-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megalobrama amblycephala Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1881202v1 Primary Assembly

Genomic

  1. NC_063051.1 Reference ASM1881202v1 Primary Assembly

    Range
    34427552..34482595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048200824.1 → XP_048056781.1  voltage-dependent T-type calcium channel subunit alpha-1I-like

    Related
    ENSMAYP00005017411.1, ENSMAYT00005019640.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases