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rapgef2a Rap guanine nucleotide exchange factor 2a [ Megalobrama amblycephala (Wuchang bream) ]

Gene ID: 125272614, updated on 22-Mar-2024

Summary

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Gene symbol
rapgef2a
Gene description
Rap guanine nucleotide exchange factor 2a
See related
EnsemblRapid:ENSMAYG00005017788
Gene type
protein coding
RefSeq status
MODEL
Organism
Megalobrama amblycephala
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama
Orthologs
zebrafish all
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Genomic context

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See rapgef2a in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
31
Annotation release Status Assembly LG Location
100 current ASM1881202v1 (GCF_018812025.1) LG7 NC_063050.1 (43065270..43110892, complement)

Linkage Group LG7 - NC_063050.1Genomic Context describing neighboring genes Neighboring gene methylsterol monooxygenase 1 Neighboring gene kelch-like family member 2 Neighboring gene neuropeptide Y receptor Y1 Neighboring gene transmembrane protein 144a Neighboring gene mediator complex subunit 28

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063050.1 Chromosome LG7 Reference ASM1881202v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rap guanine nucleotide exchange factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megalobrama amblycephala Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1881202v1 Primary Assembly

Genomic

  1. NC_063050.1 Reference ASM1881202v1 Primary Assembly

    Range
    43065270..43110892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048197598.1 → XP_048053555.1  rap guanine nucleotide exchange factor 2 isoform X2

  2. XM_048197599.1 → XP_048053556.1  rap guanine nucleotide exchange factor 2 isoform X3

  3. XM_048197597.1 → XP_048053554.1  rap guanine nucleotide exchange factor 2 isoform X1

  4. XM_048197600.1 → XP_048053557.1  rap guanine nucleotide exchange factor 2 isoform X4

    Related
    ENSMAYP00005044378.1, ENSMAYT00005048391.1

  5. XM_048197601.1 → XP_048053558.1  rap guanine nucleotide exchange factor 2 isoform X5

    Related
    ENSMAYP00005044176.1, ENSMAYT00005048134.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases