U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 [ Megalobrama amblycephala (Wuchang bream) ]

Gene ID: 125259295, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
nfkb1
Gene description
nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Megalobrama amblycephala
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama
Also known as
RelB
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See nfkb1 in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
25
Annotation release Status Assembly LG Location
100 current ASM1881202v1 (GCF_018812025.1) LG23 NC_063066.1 (25071031..25117248, complement)

Linkage Group LG23 - NC_063066.1Genomic Context describing neighboring genes Neighboring gene metal cation symporter ZIP8 Neighboring gene abhydrolase domain containing 18 Neighboring gene diacylglycerol kinase theta Neighboring gene ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like Neighboring gene transcription factor COE3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_063066.1 Chromosome LG23 Reference ASM1881202v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nuclear factor NF-kappa-B p105 subunit

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Megalobrama amblycephala Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1881202v1 Primary Assembly

Genomic

  1. NC_063066.1 Reference ASM1881202v1 Primary Assembly

    Range
    25071031..25117248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048176853.1 → XP_048032810.1  nuclear factor NF-kappa-B p105 subunit isoform X2

  2. XM_048176851.1 → XP_048032808.1  nuclear factor NF-kappa-B p105 subunit isoform X1

  3. XM_048176852.1 → XP_048032809.1  nuclear factor NF-kappa-B p105 subunit isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.