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cacna1ab calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b [ Megalobrama amblycephala (Wuchang bream) ]

Gene ID: 125256929, updated on 22-Mar-2024

Summary

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Gene symbol
cacna1ab
Gene description
calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b
See related
EnsemblRapid:ENSMAYG00005032501
Gene type
protein coding
RefSeq status
MODEL
Organism
Megalobrama amblycephala
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama
Orthologs
zebrafish all
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Genomic context

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See cacna1ab in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
52
Annotation release Status Assembly LG Location
100 current ASM1881202v1 (GCF_018812025.1) LG21 NC_063064.1 (23637816..23791429)

Linkage Group LG21 - NC_063064.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 7a Neighboring gene WD repeat domain 83 opposite strand Neighboring gene syntaxin-10-like Neighboring gene immediate early response 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063064.1 Chromosome LG21 Reference ASM1881202v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megalobrama amblycephala Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1881202v1 Primary Assembly

Genomic

  1. NC_063064.1 Reference ASM1881202v1 Primary Assembly

    Range
    23637816..23791429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048173265.1 → XP_048029222.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X12

    Related
    ENSMAYP00005075283.1, ENSMAYT00005085169.1

  2. XM_048173253.1 → XP_048029210.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X1

  3. XM_048173260.1 → XP_048029217.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X7

  4. XM_048173262.1 → XP_048029219.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X9

  5. XM_048173263.1 → XP_048029220.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X10

  6. XM_048173258.1 → XP_048029215.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X5

  7. XM_048173255.1 → XP_048029212.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X3

  8. XM_048173259.1 → XP_048029216.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X6

  9. XM_048173254.1 → XP_048029211.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X2

  10. XM_048173257.1 → XP_048029214.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X4

  11. XM_048173261.1 → XP_048029218.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X8

  12. XM_048173264.1 → XP_048029221.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X11

    Related
    ENSMAYP00005075251.1, ENSMAYT00005085126.1

  13. XM_048173267.1 → XP_048029224.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X14

    Related
    ENSMAYP00005074922.1, ENSMAYT00005084666.1

  14. XM_048173266.1 → XP_048029223.1  calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X13

RNA

  1. XR_007182217.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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