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hcfc1a host cell factor C1a [ Megalobrama amblycephala (Wuchang bream) ]

Gene ID: 125256534, updated on 22-Mar-2024

Summary

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Gene symbol
hcfc1a
Gene description
host cell factor C1a
See related
EnsemblRapid:ENSMAYG00005023906
Gene type
protein coding
RefSeq status
MODEL
Organism
Megalobrama amblycephala
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama
Orthologs
zebrafish all
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Genomic context

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See hcfc1a in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
28
Annotation release Status Assembly LG Location
100 current ASM1881202v1 (GCF_018812025.1) LG21 NC_063064.1 (21452060..21477717, complement)

Linkage Group LG21 - NC_063064.1Genomic Context describing neighboring genes Neighboring gene GATA binding protein 1a Neighboring gene uncharacterized LOC125256537 Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene uncharacterized LOC125256538 Neighboring gene red-sensitive opsin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063064.1 Chromosome LG21 Reference ASM1881202v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megalobrama amblycephala Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1881202v1 Primary Assembly

Genomic

  1. NC_063064.1 Reference ASM1881202v1 Primary Assembly

    Range
    21452060..21477717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048172606.1 → XP_048028563.1  host cell factor 1a

    Related
    ENSMAYP00005056047.1, ENSMAYT00005061002.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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