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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Megalobrama amblycephala (Wuchang bream) ]

Gene ID: 125252270, updated on 22-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
EnsemblRapid:ENSMAYG00005014970
Gene type
protein coding
RefSeq status
MODEL
Organism
Megalobrama amblycephala
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: LG18
Exon count:
13
Annotation release Status Assembly LG Location
100 current ASM1881202v1 (GCF_018812025.1) LG18 NC_063061.1 (10226190..10484330, complement)

Linkage Group LG18 - NC_063061.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene uncharacterized LOC125253282 Neighboring gene uncharacterized LOC125253532

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063061.1 Chromosome LG18 Reference ASM1881202v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megalobrama amblycephala Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1881202v1 Primary Assembly

Genomic

  1. NC_063061.1 Reference ASM1881202v1 Primary Assembly

    Range
    10226190..10484330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048165456.1 → XP_048021413.1  delta-sarcoglycan isoform X2

    Related
    ENSMAYP00005033363.1, ENSMAYT00005036406.1

  2. XM_048165460.1 → XP_048021417.1  delta-sarcoglycan isoform X2

  3. XM_048165458.1 → XP_048021415.1  delta-sarcoglycan isoform X2

  4. XM_048165459.1 → XP_048021416.1  delta-sarcoglycan isoform X2

  5. XM_048165457.1 → XP_048021414.1  delta-sarcoglycan isoform X2

    Related
    ENSMAYP00005033375.1, ENSMAYT00005036418.1

  6. XM_048165455.1 → XP_048021412.1  delta-sarcoglycan isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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