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cacna1eb calcium channel, voltage-dependent, R type, alpha 1E subunit b [ Megalobrama amblycephala (Wuchang bream) ]

Gene ID: 125250621, updated on 22-Mar-2024

Summary

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Gene symbol
cacna1eb
Gene description
calcium channel, voltage-dependent, R type, alpha 1E subunit b
See related
EnsemblRapid:ENSMAYG00005019916
Gene type
protein coding
RefSeq status
MODEL
Organism
Megalobrama amblycephala
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama
Orthologs
zebrafish all
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Genomic context

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See cacna1eb in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
43
Annotation release Status Assembly LG Location
100 current ASM1881202v1 (GCF_018812025.1) LG17 NC_063060.1 (22374664..22475354, complement)

Linkage Group LG17 - NC_063060.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase pim-2-like Neighboring gene RNA polymerase II subunit D Neighboring gene uncharacterized protein K02A2.6 Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like Neighboring gene uncharacterized LOC125251533

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063060.1 Chromosome LG17 Reference ASM1881202v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent R-type calcium channel subunit alpha-1E

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megalobrama amblycephala Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1881202v1 Primary Assembly

Genomic

  1. NC_063060.1 Reference ASM1881202v1 Primary Assembly

    Range
    22374664..22475354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048163299.1 → XP_048019256.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X2

    Related
    ENSMAYP00005049594.1, ENSMAYT00005053755.1

  2. XM_048163298.1 → XP_048019255.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases