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CSPG5 chondroitin sulfate proteoglycan 5 [ Anser cygnoides (Swan goose) ]

Gene ID: 125180901, updated on 7-Aug-2024

Summary

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Gene symbol
CSPG5
Gene description
chondroitin sulfate proteoglycan 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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See CSPG5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 2 NC_089874.1 (1201754..1208644)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927975.1 (142413..148636, complement)

Chromosome 2 - NC_089874.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106046820 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit C1 Neighboring gene uncharacterized LOC136789867 Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene SREBF chaperone

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell projection morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089874.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    1201754..1208644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066991079.1 → XP_066847180.1  chondroitin sulfate proteoglycan 5 isoform X2

  2. XM_066991080.1 → XP_066847181.1  chondroitin sulfate proteoglycan 5 isoform X3

  3. XM_066991078.1 → XP_066847179.1  chondroitin sulfate proteoglycan 5 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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