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CAPN3 calpain 3 [ Prionailurus viverrinus (fishing cat) ]

Gene ID: 125167938, updated on 22-Mar-2024

Summary

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Gene symbol
CAPN3
Gene description
calpain 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Prionailurus viverrinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Prionailurus
Orthologs
human mouse all
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Genomic context

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See CAPN3 in Genome Data Viewer
Location:
chromosome: B3
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_03 current UM_Priviv_1.0 (GCF_022837055.1) B3 NC_062566.1 (56281608..56331801, complement)

Chromosome B3 - NC_062566.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125168203 Neighboring gene synaptosome associated protein 23 Neighboring gene ferritin light chain-like Neighboring gene zinc finger protein 106 Neighboring gene glucosidase alpha, neutral C Neighboring gene U2 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene transmembrane protein 87A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_062566.1 Chromosome B3 Reference UM_Priviv_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022837055.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_Priviv_1.0 Primary Assembly

Genomic

  1. NC_062566.1 Reference UM_Priviv_1.0 Primary Assembly

    Range
    56281608..56331801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047862857.1 → XP_047718813.1  calpain-3 isoform X3

  2. XM_047862855.1 → XP_047718811.1  calpain-3 isoform X1

  3. XM_047862856.1 → XP_047718812.1  calpain-3 isoform X2

  4. XM_047862858.1 → XP_047718814.1  calpain-3 isoform X4

Nucleotide Protein
Heading Accession and Version

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