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P3h2 prolyl 3-hydroxylase 2 [ Sciurus carolinensis (gray squirrel) ]

Gene ID: 124993301, updated on 22-Mar-2024

Summary

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Gene symbol
P3h2
Gene description
prolyl 3-hydroxylase 2
See related
EnsemblRapid:ENSSCRG00010017889
Gene type
protein coding
RefSeq status
MODEL
Organism
Sciurus carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Sciurinae; Sciurini; Sciurus
Orthologs
human mouse all
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Genomic context

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See P3h2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current mSciCar1.2 (GCF_902686445.1) 9 NC_062221.1 (59788348..59946657, complement)

Chromosome 9 - NC_062221.1Genomic Context describing neighboring genes Neighboring gene tumor protein p63 regulated 1 Neighboring gene tumor protein p63 Neighboring gene ATP synthase F(0) complex subunit B1, mitochondrial-like Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_062221.1 Chromosome 9 Reference mSciCar1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: prolyl 3-hydroxylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902686445.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSciCar1.2

Genomic

  1. NC_062221.1 Reference mSciCar1.2

    Range
    59788348..59946657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047565062.1 → XP_047421018.1  LOW QUALITY PROTEIN: prolyl 3-hydroxylase 2

    Related
    ENSSCRP00010020630.1, ENSSCRT00010023244.1
Nucleotide Protein
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Gene LinkOut

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