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Synj1 synaptojanin 1 [ Sciurus carolinensis (gray squirrel) ]

Gene ID: 124992668, updated on 22-Mar-2024

Summary

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Gene symbol
Synj1
Gene description
synaptojanin 1
See related
EnsemblRapid:ENSSCRG00010009609
Gene type
protein coding
RefSeq status
MODEL
Organism
Sciurus carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Sciurinae; Sciurini; Sciurus
Orthologs
human mouse all
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Genomic context

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See Synj1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2023_03 current mSciCar1.2 (GCF_902686445.1) 9 NC_062221.1 (130184028..130262633, complement)

Chromosome 9 - NC_062221.1Genomic Context describing neighboring genes Neighboring gene eva-1 homolog C Neighboring gene cilia and flagella associated protein 298 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene exosomal polycystin 1 interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_062221.1 Chromosome 9 Reference mSciCar1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902686445.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSciCar1.2

Genomic

  1. NC_062221.1 Reference mSciCar1.2

    Range
    130184028..130262633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047563774.1 → XP_047419730.1  synaptojanin-1 isoform X1

    Related
    ENSSCRP00010011068.1, ENSSCRT00010012420.1

  2. XM_047563778.1 → XP_047419734.1  synaptojanin-1 isoform X5

  3. XM_047563782.1 → XP_047419738.1  synaptojanin-1 isoform X8

  4. XM_047563776.1 → XP_047419732.1  synaptojanin-1 isoform X3

  5. XM_047563781.1 → XP_047419737.1  synaptojanin-1 isoform X7

  6. XM_047563779.1 → XP_047419735.1  synaptojanin-1 isoform X6

  7. XM_047563777.1 → XP_047419733.1  synaptojanin-1 isoform X4

  8. XM_047563775.1 → XP_047419731.1  synaptojanin-1 isoform X2

  9. XM_047563787.1 → XP_047419743.1  synaptojanin-1 isoform X12

  10. XM_047563786.1 → XP_047419742.1  synaptojanin-1 isoform X11

    Related
    ENSSCRP00010011078.1, ENSSCRT00010012430.1

  11. XM_047563788.1 → XP_047419744.1  synaptojanin-1 isoform X13

  12. XM_047563785.1 → XP_047419741.1  synaptojanin-1 isoform X10

  13. XM_047563783.1 → XP_047419739.1  synaptojanin-1 isoform X9

  14. XM_047563784.1 → XP_047419740.1  synaptojanin-1 isoform X9

Nucleotide Protein
Heading Accession and Version

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