U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Chrna1 cholinergic receptor nicotinic alpha 1 subunit [ Sciurus carolinensis (gray squirrel) ]

Gene ID: 124980116, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Chrna1
Gene description
cholinergic receptor nicotinic alpha 1 subunit
See related
EnsemblRapid:ENSSCRG00010016725
Gene type
protein coding
RefSeq status
MODEL
Organism
Sciurus carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Sciurinae; Sciurini; Sciurus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Chrna1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current mSciCar1.2 (GCF_902686445.1) 3 NC_062215.1 (123898839..123917991, complement)

Chromosome 3 - NC_062215.1Genomic Context describing neighboring genes Neighboring gene WAS/WASL interacting protein family member 1 Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene chimerin 1 Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene activating transcription factor 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_062215.1 Chromosome 3 Reference mSciCar1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
acetylcholine receptor subunit alpha

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_902686445.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSciCar1.2

Genomic

  1. NC_062215.1 Reference mSciCar1.2

    Range
    123898839..123917991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047545333.1 → XP_047401289.1  acetylcholine receptor subunit alpha

    Related
    ENSSCRP00010019351.1, ENSSCRT00010021760.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.