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LOC124900217 collagen alpha-1(III) chain [ Homo sapiens (human) ]

Gene ID: 124900217, updated on 22-Mar-2024

Summary

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Gene symbol
LOC124900217
Gene description
collagen alpha-1(III) chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
all
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Genomic context

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Location:
6q24.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (138692726..138697288)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (139881263..139885825)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr6:138762212-138762399 Neighboring gene NHS like 1 Neighboring gene microRNA 3145 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:138807227-138807846 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90625 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90641 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:138893284-138894040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:138897819-138898319 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:138912362-138912862 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:138912863-138913363 Neighboring gene Sharpr-MPRA regulatory region 8531 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25159 Neighboring gene MTCH1 pseudogene 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:139012200-139013399 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17597 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17598 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17599 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17600 Neighboring gene NHSL1 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:139043918-139044568 Neighboring gene CCDC28A antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25160 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:139093957-139094631 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:139094632-139095305 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90660 Neighboring gene coiled-coil domain containing 28A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(III) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    138692726..138697288
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047419634.1 → XP_047275590.1  collagen alpha-1(III) chain

  2. XM_047419637.1 → XP_047275593.1  collagen alpha-1(III) chain

  3. XM_047419635.1 → XP_047275591.1  collagen alpha-1(III) chain

  4. XM_047419633.1 → XP_047275589.1  collagen alpha-1(III) chain

  5. XM_047419636.1 → XP_047275592.1  collagen alpha-1(III) chain

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    139881263..139885825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054356930.1 → XP_054212905.1  collagen alpha-1(III) chain

  2. XM_054356933.1 → XP_054212908.1  collagen alpha-1(III) chain

  3. XM_054356931.1 → XP_054212906.1  collagen alpha-1(III) chain

  4. XM_054356929.1 → XP_054212904.1  collagen alpha-1(III) chain

  5. XM_054356932.1 → XP_054212907.1  collagen alpha-1(III) chain

Nucleotide Protein
Heading Accession and Version

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