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capn3b calpain 3b [ Girardinichthys multiradiatus ]

Gene ID: 124882084, updated on 22-Mar-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
EnsemblRapid:ENSGMLG00005014107
Gene type
protein coding
RefSeq status
MODEL
Organism
Girardinichthys multiradiatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Goodeidae; Girardinichthys
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: 15
Exon count:
23
Annotation release Status Assembly Chr Location
100 current DD_fGirMul_XY1 (GCF_021462225.1) 15 NC_061808.1 (12900884..12919524)

Chromosome 15 - NC_061808.1Genomic Context describing neighboring genes Neighboring gene macoilin-1 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene nuclear receptor binding protein 1 Neighboring gene zinc finger protein 106b Neighboring gene churchill domain containing 1 Neighboring gene tau tubulin kinase 2b Neighboring gene mitotic deacetylase associated SANT domain protein a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_061808.1 Chromosome 15 Reference DD_fGirMul_XY1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Girardinichthys multiradiatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DD_fGirMul_XY1

Genomic

  1. NC_061808.1 Reference DD_fGirMul_XY1

    Range
    12900884..12919524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047388239.1 → XP_047244195.1  calpain-3b isoform X1

    Related
    ENSGMLP00005024849.1, ENSGMLT00005025408.1

  2. XM_047388240.1 → XP_047244196.1  calpain-3b isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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