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LOC124845308 carboxyl-terminal-processing peptidase 1, chloroplastic [ Vigna umbellata ]

Gene ID: 124845308, updated on 23-Oct-2023

Summary

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Gene symbol
LOC124845308
Gene description
carboxyl-terminal-processing peptidase 1, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna umbellata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC124845308 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM1883591v1 (GCF_018835915.1) Unplaced Scaffold NW_025909063.1 (69915..80853, complement)

NW_025909063.1Genomic Context describing neighboring genes Neighboring gene sulfite exporter TauE/SafE family protein 3-like Neighboring gene cold-regulated 413 inner membrane protein 2, chloroplastic-like Neighboring gene PLASMODESMATA CALLOSE-BINDING PROTEIN 2 Neighboring gene protein tas-like Neighboring gene uncharacterized LOC124845316

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025909063 Unplaced Scaffold Reference ASM1883591v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vigna umbellata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883591v1

Genomic

  1. NW_025909063.1 Reference ASM1883591v1

    Range
    69915..80853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047322381.1 → XP_047178337.1  carboxyl-terminal-processing peptidase 1, chloroplastic

Nucleotide Protein
Heading Accession and Version

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