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SWIP strumpellin and WASH-interacting protein [ Vanessa cardui ]

Gene ID: 124532117, updated on 23-May-2024

Summary

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Gene symbol
SWIP
Gene description
strumpellin and WASH-interacting protein
See related
EnsemblRapid:ENSVCAG00000004845
Gene type
protein coding
RefSeq status
MODEL
Organism
Vanessa cardui
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Vanessa
Orthologs
fruit fly all
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Genomic context

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See SWIP in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ilVanCard2.1 (GCF_905220365.1) 8 NC_061130.1 (13082103..13086152, complement)

Chromosome 8 - NC_061130.1Genomic Context describing neighboring genes Neighboring gene syntaxin-5 Neighboring gene barrier to autointegration factor Neighboring gene pre-mRNA processing factor 40 Neighboring gene TATA-box-binding protein Neighboring gene Protein-L-isoaspartate (D-aspartate) O-methyltransferase Neighboring gene DNA repair endonuclease XPF mei-9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_061130.1 Chromosome 8 Reference ilVanCard2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vanessa cardui Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ilVanCard2.1

Genomic

  1. NC_061130.1 Reference ilVanCard2.1

    Range
    13082103..13086152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047106820.1 → XP_046962776.1  WASH complex subunit 4

    Related
    ENSVCAP00000006541.1, ENSVCAT00000008547.1
Nucleotide Protein
Heading Accession and Version

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