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PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing [ Lynx rufus (bobcat) ]

Gene ID: 124514679, updated on 22-Mar-2024

Summary

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Gene symbol
PIKFYVE
Gene description
phosphoinositide kinase, FYVE-type zinc finger containing
Gene type
protein coding
RefSeq status
MODEL
Organism
Lynx rufus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Lynx
Orthologs
human mouse all
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Genomic context

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See PIKFYVE in Genome Data Viewer
Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2023_03 current mLynRuf1.p (GCF_022079265.1) Unplaced Scaffold NW_025814834.1 (27983699..28064620, complement)

NW_025814834.1Genomic Context describing neighboring genes Neighboring gene gamma-crystallin F Neighboring gene parathyroid hormone 2 receptor Neighboring gene U6 spliceosomal RNA Neighboring gene chromosome unknown C2orf80 homolog Neighboring gene isocitrate dehydrogenase (NADP(+)) 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025814834 Unplaced Scaffold Reference mLynRuf1.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-phosphate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 3-phosphate 5-kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022079265.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLynRuf1.p

Genomic

  1. NW_025814834.1 Reference mLynRuf1.p

    Range
    27983699..28064620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047082838.1 → XP_046938794.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X3

  2. XM_047082837.1 → XP_046938793.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X2

  3. XM_047082836.1 → XP_046938792.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X1

  4. XM_047082839.1 → XP_046938795.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X4

Nucleotide Protein
Heading Accession and Version

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