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tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Silurus meridionalis ]

Gene ID: 124401169, updated on 22-Mar-2024

Summary

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Gene symbol
tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
Locus tag
HF521_007620
Gene type
protein coding
RefSeq status
MODEL
Organism
Silurus meridionalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Siluridae; Silurus
Orthologs
human zebrafish all
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Genomic context

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See tmtc1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM1480568v1 (GCF_014805685.1) 18 NC_060901.1 (5883393..5927518)

Chromosome 18 - NC_060901.1Genomic Context describing neighboring genes Neighboring gene KICSTOR subunit 2 Neighboring gene importin 8 Neighboring gene ovochymase 1 Neighboring gene lipase maturation factor 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060901.1 Chromosome 18 Reference ASM1480568v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Silurus meridionalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1480568v1 Primary Assembly

Genomic

  1. NC_060901.1 Reference ASM1480568v1 Primary Assembly

    Range
    5883393..5927518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046873212.1 → XP_046729168.1  protein O-mannosyl-transferase TMTC1 isoform X1

  2. XM_046873213.1 → XP_046729169.1  protein O-mannosyl-transferase TMTC1 isoform X2

    UniProtKB/TrEMBL
    A0A8T0APB0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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