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zgc:112962 uncharacterized LOC124399973 [ Silurus meridionalis ]

Gene ID: 124399973, updated on 10-Oct-2024

Summary

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Gene symbol
zgc:112962
Gene description
uncharacterized LOC124399973
Locus tag
HF521_007124
Gene type
protein coding
RefSeq status
MODEL
Organism
Silurus meridionalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Siluridae; Silurus
Orthologs
zebrafish all
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Genomic context

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See zgc:112962 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM1480568v1 (GCF_014805685.1) 17 NC_060900.1 (17789063..17800431)

Chromosome 17 - NC_060900.1Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domains 1 Neighboring gene aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 Neighboring gene uncharacterized LOC124399526 Neighboring gene uncharacterized LOC124399528

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060900.1 Chromosome 17 Reference ASM1480568v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 1; torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Silurus meridionalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1480568v1 Primary Assembly

Genomic

  1. NC_060900.1 Reference ASM1480568v1 Primary Assembly

    Range
    17789063..17800431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046871378.1 → XP_046727334.1  torsin-1A-interacting protein 2 isoform X2

  2. XM_046871377.1 → XP_046727333.1  torsin-1A-interacting protein 2 isoform X1

  3. XM_046871379.1 → XP_046727335.1  torsin-1A-interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8T0ATD8
Nucleotide Protein
Heading Accession and Version

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