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sgcg sarcoglycan, gamma [ Silurus meridionalis ]

Gene ID: 124394371, updated on 22-Mar-2024

Summary

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Gene symbol
sgcg
Gene description
sarcoglycan, gamma
Locus tag
HF521_003137
Gene type
protein coding
RefSeq status
MODEL
Organism
Silurus meridionalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Siluridae; Silurus
Orthologs
human zebrafish all
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Genomic context

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See sgcg in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM1480568v1 (GCF_014805685.1) 12 NC_060895.1 (16003044..16013882, complement)

Chromosome 12 - NC_060895.1Genomic Context describing neighboring genes Neighboring gene mitochondrial intermediate peptidase a Neighboring gene tumor necrosis factor receptor superfamily, member 19 Neighboring gene sacsin molecular chaperone Neighboring gene potassium channel subfamily K member 13 Neighboring gene trafficking protein particle complex subunit 4 Neighboring gene solute carrier family 37 member 4a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060895.1 Chromosome 12 Reference ASM1480568v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Silurus meridionalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1480568v1 Primary Assembly

Genomic

  1. NC_060895.1 Reference ASM1480568v1 Primary Assembly

    Range
    16003044..16013882 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046862515.1 → XP_046718471.1  gamma-sarcoglycan

Nucleotide Protein
Heading Accession and Version

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