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pomt1 protein-O-mannosyltransferase 1 [ Silurus meridionalis ]

Gene ID: 124380775, updated on 22-Mar-2024

Summary

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Gene symbol
pomt1
Gene description
protein-O-mannosyltransferase 1
Locus tag
HF521_014547
Gene type
protein coding
RefSeq status
MODEL
Organism
Silurus meridionalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Siluridae; Silurus
Orthologs
human zebrafish all
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Genomic context

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See pomt1 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM1480568v1 (GCF_014805685.1) 27 NC_060910.1 (6817511..6826506)

Chromosome 27 - NC_060910.1Genomic Context describing neighboring genes Neighboring gene glucosaminyl (N-acetyl) transferase 4a Neighboring gene family with sequence similarity 169 member Aa Neighboring gene coiled-coil domain containing 180 Neighboring gene caspase recruitment domain family, member 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060910.1 Chromosome 27 Reference ASM1480568v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Silurus meridionalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1480568v1 Primary Assembly

Genomic

  1. NC_060910.1 Reference ASM1480568v1 Primary Assembly

    Range
    6817511..6826506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046842032.1 → XP_046697988.1  protein O-mannosyl-transferase 1

    UniProtKB/TrEMBL
    A0A8T0A7T0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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