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LOC124379519 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Silurus meridionalis ]

Gene ID: 124379519, updated on 30-Nov-2023

Summary

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Gene symbol
LOC124379519
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
Locus tag
HF521_013796
Gene type
protein coding
RefSeq status
MODEL
Organism
Silurus meridionalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Siluridae; Silurus
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Genomic context

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See LOC124379519 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM1480568v1 (GCF_014805685.1) 25 NC_060908.1 (16441319..16447445, complement)

Chromosome 25 - NC_060908.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124379523 Neighboring gene uncharacterized LOC124379522 Neighboring gene histo-blood group ABO system transferase-like Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060908.1 Chromosome 25 Reference ASM1480568v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Silurus meridionalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1480568v1 Primary Assembly

Genomic

  1. NC_060908.1 Reference ASM1480568v1 Primary Assembly

    Range
    16441319..16447445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046839915.1 → XP_046695871.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X2

  2. XM_046839914.1 → XP_046695870.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A8T0ACJ0
Nucleotide Protein
Heading Accession and Version

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