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LOC124256357 aspartyl/asparaginyl beta-hydroxylase-like [ Haliotis rubra (blacklip abalone) ]

Gene ID: 124256357, updated on 30-Nov-2023

Summary

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Gene symbol
LOC124256357
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
See related
EnsemblRapid:LOC124256357
Gene type
protein coding
RefSeq status
MODEL
Organism
Haliotis rubra
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis
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Genomic context

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See LOC124256357 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM391887v1 (GCF_003918875.1) Unplaced Scaffold NW_025767331.1 (343661..355043)

NW_025767331.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase A-like Neighboring gene sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3-like Neighboring gene uncharacterized LOC124256359 Neighboring gene zinc finger protein Eos-like Neighboring gene transfer RNA glutamine (anticodon CUG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025767331 Unplaced Scaffold Reference ASM391887v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haliotis rubra Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM391887v1 Primary Assembly

Genomic

  1. NW_025767331.1 Reference ASM391887v1 Primary Assembly

    Range
    343661..355043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046690357.1 → XP_046546313.1  LOW QUALITY PROTEIN: aspartyl/asparaginyl beta-hydroxylase-like

    Related
    XP_046546313.1, XM_046690357.1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases