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capn3a calpain 3a, (p94) [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 124046822, updated on 22-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
22
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG10 NC_060182.1 (97642176..97711022, complement)

Linkage Group LG10 - NC_060182.1Genomic Context describing neighboring genes Neighboring gene dynactin subunit 1-like Neighboring gene zinc finger protein 106a Neighboring gene proton activated chloride channel 1 Neighboring gene transmembrane protein 87A-like Neighboring gene vam6/Vps39-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060182.1 Chromosome LG10 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060182.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    97642176..97711022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046367592.1 → XP_046223548.1  calpain-3 isoform X3

  2. XM_046367593.1 → XP_046223549.1  calpain-3 isoform X4

  3. XM_046367589.1 → XP_046223545.1  calpain-3 isoform X1

  4. XM_046367590.1 → XP_046223546.1  calpain-3 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases