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rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 124040219, updated on 22-Mar-2024

Summary

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Gene symbol
rfng
Gene description
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See rfng in Genome Data Viewer
Location:
chromosome: LG07
Exon count:
10
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG07 NC_060179.1 (63539100..63553730, complement)

Linkage Group LG07 - NC_060179.1Genomic Context describing neighboring genes Neighboring gene Rac family small GTPase 3b Neighboring gene dicarbonyl/L-xylulose reductase Neighboring gene COP9 signalosome complex subunit 1 Neighboring gene gastrin/cholecystokinin type B receptor-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060179.1 Chromosome LG07 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: beta-1,3-N-acetylglucosaminyltransferase radical fringe

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060179.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    63539100..63553730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046357183.1 → XP_046213139.1  LOW QUALITY PROTEIN: beta-1,3-N-acetylglucosaminyltransferase radical fringe

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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