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chpf2 chondroitin polymerizing factor 2 [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 124039761, updated on 22-Mar-2024

Summary

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Gene symbol
chpf2
Gene description
chondroitin polymerizing factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See chpf2 in Genome Data Viewer
Location:
chromosome: LG07
Exon count:
4
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG07 NC_060179.1 (29536733..29544630)

Linkage Group LG07 - NC_060179.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124039758 Neighboring gene ATP-binding cassette sub-family F member 2 Neighboring gene small nucleolar RNA SNORD100 Neighboring gene SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3-like Neighboring gene nuclear transcription factor, X-box binding 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060179.1 Chromosome LG07 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060179.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    29536733..29544630
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046356098.1 → XP_046212054.1  chondroitin sulfate glucuronyltransferase

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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