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LOC124036610 tight junction protein ZO-2-like [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 124036610, updated on 30-Nov-2023

Summary

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Gene symbol
LOC124036610
Gene description
tight junction protein ZO-2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC124036610 in Genome Data Viewer
Location:
chromosome: LG05
Exon count:
27
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG05 NC_060177.1 (86020651..86289512)

Linkage Group LG05 - NC_060177.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124035295 Neighboring gene frataxin Neighboring gene protein FAM189A2-like Neighboring gene mucin-19-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060177.1 Chromosome LG05 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of endothelial intestinal barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of blood-brain barrier permeability IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tight junction protein ZO-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060177.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    86020651..86289512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046351412.1 → XP_046207368.1  tight junction protein ZO-2-like isoform X3

  2. XM_046351414.1 → XP_046207370.1  tight junction protein ZO-2-like isoform X5

  3. XM_046351413.1 → XP_046207369.1  tight junction protein ZO-2-like isoform X4

  4. XM_046351410.1 → XP_046207366.1  tight junction protein ZO-2-like isoform X1

  5. XM_046351411.1 → XP_046207367.1  tight junction protein ZO-2-like isoform X2

  6. XM_046351415.1 → XP_046207371.1  tight junction protein ZO-2-like isoform X6

RNA

  1. XR_006838934.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases