U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC124031534 alpha-1,3-galactosyltransferase 2-like [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 124031534, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC124031534
Gene description
alpha-1,3-galactosyltransferase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC124031534 in Genome Data Viewer
Location:
chromosome: LG03
Exon count:
6
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG03 NC_060175.1 (52433492..52453689)

Linkage Group LG03 - NC_060175.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124031532 Neighboring gene zinc finger protein 362a Neighboring gene myosin-11 Neighboring gene epithelial membrane protein 3-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_060175.1 Chromosome LG03 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-1,3-galactosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060175.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    52433492..52453689
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046342901.1 → XP_046198857.1  alpha-1,3-galactosyltransferase 2-like isoform X3

  2. XM_046342902.1 → XP_046198858.1  alpha-1,3-galactosyltransferase 2-like isoform X3

  3. XM_046342903.1 → XP_046198859.1  alpha-1,3-galactosyltransferase 2-like isoform X3

  4. XM_046342896.1 → XP_046198852.1  alpha-1,3-galactosyltransferase 2-like isoform X2

  5. XM_046342900.1 → XP_046198856.1  alpha-1,3-galactosyltransferase 2-like isoform X2

  6. XM_046342894.1 → XP_046198850.1  alpha-1,3-galactosyltransferase 2-like isoform X1

  7. XM_046342895.1 → XP_046198851.1  alpha-1,3-galactosyltransferase 2-like isoform X1

  8. XM_046342893.1 → XP_046198849.1  alpha-1,3-galactosyltransferase 2-like isoform X1

  9. XM_046342891.1 → XP_046198847.1  alpha-1,3-galactosyltransferase 2-like isoform X1

  10. XM_046342892.1 → XP_046198848.1  alpha-1,3-galactosyltransferase 2-like isoform X1

  11. XM_046342897.1 → XP_046198853.1  alpha-1,3-galactosyltransferase 2-like isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases