U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pofut1 protein O-fucosyltransferase 1 [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 124023316, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
pofut1
Gene description
protein O-fucosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See pofut1 in Genome Data Viewer
Location:
chromosome: LG03
Exon count:
7
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG03 NC_060175.1 (99225553..99230036)

Linkage Group LG03 - NC_060175.1Genomic Context describing neighboring genes Neighboring gene transmembrane 9 superfamily member 4-like Neighboring gene zinc finger protein PLAGL2-like Neighboring gene kinesin family member 3B Neighboring gene protein-L-isoaspartate O-methyltransferase domain-containing protein 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_060175.1 Chromosome LG03 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide-O-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
GDP-fucose protein O-fucosyltransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060175.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    99225553..99230036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046337834.1 → XP_046193790.1  GDP-fucose protein O-fucosyltransferase 1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.