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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 124010894, updated on 22-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: LG02
Exon count:
9
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG02 NC_060174.1 (81584271..81870574)

Linkage Group LG02 - NC_060174.1Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 8 Neighboring gene gem (nuclear organelle) associated protein 5 Neighboring gene rho GTPase-activating protein 7-like Neighboring gene arginyl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060174.1 Chromosome LG02 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060174.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    81584271..81870574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046323674.1 → XP_046179630.1  delta-sarcoglycan

  2. XM_046323666.1 → XP_046179622.1  delta-sarcoglycan

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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