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LOC123998622 carbohydrate sulfotransferase 8-like [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 123998622, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123998622
Gene description
carbohydrate sulfotransferase 8-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC123998622 in Genome Data Viewer
Location:
chromosome: LG01
Exon count:
2
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG01 NC_060173.1 (16537306..16539271)

Linkage Group LG01 - NC_060173.1Genomic Context describing neighboring genes Neighboring gene carbohydrate sulfotransferase 8-like Neighboring gene U7 small nuclear RNA Neighboring gene vacuolar protein sorting-associated protein 4A-like Neighboring gene BTB/POZ domain-containing protein kctd15-like Neighboring gene transcription initiation factor TFIID subunit 4-like Neighboring gene LSM14A mRNA processing body assembly factor a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060173.1 Chromosome LG01 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 8-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060173.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    16537306..16539271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046303704.1 → XP_046159660.1  carbohydrate sulfotransferase 8-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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