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LOC123997566 telethonin-like [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 123997566, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123997566
Gene description
telethonin-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC123997566 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
2
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG15 NC_060187.1 (73446054..73447461)

Linkage Group LG15 - NC_060187.1Genomic Context describing neighboring genes Neighboring gene collagen triple helix repeat-containing protein 1-like Neighboring gene frizzled-6-like Neighboring gene aldehyde dehydrogenase, mitochondrial-like Neighboring gene taste receptor type 1 member 1-like Neighboring gene dual specificity tyrosine-phosphorylation-regulated kinase 1B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060187.1 Chromosome LG15 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables titin Z domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables titin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac muscle tissue morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac myofibril assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of muscle stretch IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sarcomerogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle myosin thick filament assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle thin filament assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: telethonin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060187.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    73446054..73447461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046301944.1 → XP_046157900.1  LOW QUALITY PROTEIN: telethonin-like

Nucleotide Protein
Heading Accession and Version

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