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si:dkeyp-82a1.6 torsin-1A-interacting protein 2 [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 123996564, updated on 22-Mar-2024

Summary

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Gene symbol
si:dkeyp-82a1.6
Gene description
torsin-1A-interacting protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See si:dkeyp-82a1.6 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
8
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG15 NC_060187.1 (7578664..7583553)

Linkage Group LG15 - NC_060187.1Genomic Context describing neighboring genes Neighboring gene activating transcription factor 6 Neighboring gene olfactomedin-like 2Ba Neighboring gene torsin-1A-interacting protein 2-like Neighboring gene uncharacterized LOC123996399 Neighboring gene unconventional SNARE in the ER 1 homolog (S. cerevisiae)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060187.1 Chromosome LG15 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060187.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    7578664..7583553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046300001.1 → XP_046155957.1  torsin-1A-interacting protein 2 isoform X1

  2. XM_046300002.1 → XP_046155958.1  torsin-1A-interacting protein 2 isoform X1

  3. XM_046300003.1 → XP_046155959.1  torsin-1A-interacting protein 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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