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LOC123995004 heparan sulfate glucosamine 3-O-sulfotransferase 5 [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 123995004, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123995004
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC123995004 in Genome Data Viewer
Location:
chromosome: LG14
Exon count:
4
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG14 NC_060186.1 (48186190..48256203)

Linkage Group LG14 - NC_060186.1Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase domain-containing protein 1-like Neighboring gene collagen alpha-1(X) chain-like Neighboring gene tyrosine-protein kinase SRK2-like Neighboring gene serine protease 27-like Neighboring gene trypsin-2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060186.1 Chromosome LG14 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060186.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    48186190..48256203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046298200.1 → XP_046154156.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

  2. XM_046298199.1 → XP_046154155.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases