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hs6st1b heparan sulfate 6-O-sulfotransferase 1b [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 123991360, updated on 22-Mar-2024

Summary

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Gene symbol
hs6st1b
Gene description
heparan sulfate 6-O-sulfotransferase 1b
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See hs6st1b in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
2
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG12 NC_060184.1 (71876692..71977140)

Linkage Group LG12 - NC_060184.1Genomic Context describing neighboring genes Neighboring gene apoptosis regulator Bcl-2-like Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene caveolae-associated protein 4a-like Neighboring gene tomoregulin-1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060184.1 Chromosome LG12 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060184.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    71876692..71977140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046292871.1 → XP_046148827.1  heparan-sulfate 6-O-sulfotransferase 1-B

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases