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capn3b calpain 3b [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 123990572, updated on 22-Mar-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
23
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG12 NC_060184.1 (14627602..14665044, complement)

Linkage Group LG12 - NC_060184.1Genomic Context describing neighboring genes Neighboring gene churchill domain containing 1 Neighboring gene zinc finger protein 106b Neighboring gene nuclear receptor binding protein 1 Neighboring gene macoilin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060184.1 Chromosome LG12 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060184.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    14627602..14665044 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046291189.1 → XP_046147145.1  calpain-3b isoform X4

  2. XM_046291187.1 → XP_046147143.1  calpain-3b isoform X2

  3. XM_046291188.1 → XP_046147144.1  calpain-3b isoform X3

  4. XM_046291186.1 → XP_046147142.1  calpain-3b isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases