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LOC123990421 laminin subunit alpha-1-like [ Oncorhynchus gorbuscha (pink salmon) ]

Gene ID: 123990421, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123990421
Gene description
laminin subunit alpha-1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus gorbuscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC123990421 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
56
Annotation release Status Assembly LG Location
100 current OgorEven_v1.0 (GCF_021184085.1) LG12 NC_060184.1 (73343799..73435732)

Linkage Group LG12 - NC_060184.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat-containing protein 30-like Neighboring gene uncharacterized LOC123990420 Neighboring gene rho GTPase-activating protein 18-like Neighboring gene lethal(3)malignant brain tumor-like protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060184.1 Chromosome LG12 Reference OgorEven_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OgorEven_v1.0 Primary Assembly

Genomic

  1. NC_060184.1 Reference OgorEven_v1.0 Primary Assembly

    Range
    73343799..73435732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046290969.1 → XP_046146925.1  laminin subunit alpha-1-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases