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LOC123902507 carboxyl-terminal-processing peptidase 2, chloroplastic [ Trifolium pratense ]

Gene ID: 123902507, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123902507
Gene description
carboxyl-terminal-processing peptidase 2, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Trifolium pratense
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Genomic context

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See LOC123902507 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
13
Annotation release Status Assembly LG Location
100 current ARS_RC_1.1 (GCF_020283565.1) LG1 NC_060059.1 (18880192..18889498, complement)

Linkage Group LG1 - NC_060059.1Genomic Context describing neighboring genes Neighboring gene polyadenylate-binding protein 1-like Neighboring gene probable GTP-binding protein OBGM, mitochondrial Neighboring gene protein BCCIP homolog Neighboring gene uncharacterized LOC123902509

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060059.1 Chromosome LG1 Reference ARS_RC_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification. Yates SA, et al. BMC Genomics, 2014 Jun 9. PMID 24912738, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trifolium pratense Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS_RC_1.1 Primary Assembly

Genomic

  1. NC_060059.1 Reference ARS_RC_1.1 Primary Assembly

    Range
    18880192..18889498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045952259.1 → XP_045808215.1  carboxyl-terminal-processing peptidase 2, chloroplastic

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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