U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC123895520 callose synthase 1-like [ Trifolium pratense ]

Gene ID: 123895520, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC123895520
Gene description
callose synthase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Trifolium pratense
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC123895520 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
44
Annotation release Status Assembly LG Location
100 current ARS_RC_1.1 (GCF_020283565.1) LG7 NC_060065.1 (37718180..37736296, complement)

Linkage Group LG7 - NC_060065.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123899056 Neighboring gene uncharacterized LOC123898220 Neighboring gene uncharacterized LOC123899566 Neighboring gene protein transport protein SEC31 homolog B-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_060065.1 Chromosome LG7 Reference ARS_RC_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification. Yates SA, et al. BMC Genomics, 2014 Jun 9. PMID 24912738, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
callose synthase 1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Trifolium pratense Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS_RC_1.1 Primary Assembly

Genomic

  1. NC_060065.1 Reference ARS_RC_1.1 Primary Assembly

    Range
    37718180..37736296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045945897.1 → XP_045801853.1  callose synthase 1-like

  2. XM_045945894.1 → XP_045801850.1  callose synthase 1-like

  3. XM_045945895.1 → XP_045801851.1  callose synthase 1-like

  4. XM_045945893.1 → XP_045801849.1  callose synthase 1-like

  5. XM_045945896.1 → XP_045801852.1  callose synthase 1-like

  6. XM_045945892.1 → XP_045801848.1  callose synthase 1-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.