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LOC123882278 conserved oligomeric Golgi complex subunit 5 [ Trifolium pratense ]

Gene ID: 123882278, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123882278
Gene description
conserved oligomeric Golgi complex subunit 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Trifolium pratense
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Genomic context

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See LOC123882278 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
5
Annotation release Status Assembly LG Location
100 current ARS_RC_1.1 (GCF_020283565.1) LG4 NC_060062.1 (39034969..39042241)

Linkage Group LG4 - NC_060062.1Genomic Context describing neighboring genes Neighboring gene probable sucrose-phosphate synthase 3 Neighboring gene uncharacterized LOC123882277 Neighboring gene uncharacterized LOC123882279 Neighboring gene GDSL esterase/lipase At4g10955-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060062.1 Chromosome LG4 Reference ARS_RC_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification. Yates SA, et al. BMC Genomics, 2014 Jun 9. PMID 24912738, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trifolium pratense Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS_RC_1.1 Primary Assembly

Genomic

  1. NC_060062.1 Reference ARS_RC_1.1 Primary Assembly

    Range
    39034969..39042241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045931109.1 → XP_045787065.1  conserved oligomeric Golgi complex subunit 5

    UniProtKB/TrEMBL
    A0A2K3NNB7

RNA

  1. XR_006799752.1 RNA Sequence

  2. XR_006799751.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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