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SGCA sarcoglycan alpha [ Phyllostomus hastatus (greater spear-nosed bat) ]

Gene ID: 123817119, updated on 30-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Phyllostomus hastatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Phyllostominae; Phyllostomus
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current TTU_PhHast_1.1 (GCF_019186645.2) Unplaced Scaffold NW_025333737.1 (25876470..25890152, complement)

NW_025333737.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 92 Neighboring gene collagen type I alpha 1 chain Neighboring gene uncharacterized LOC123817120 Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene sterile alpha motif domain containing 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025333737 Unplaced Scaffold Reference TTU_PhHast_1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phyllostomus hastatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TTU_PhHast_1.1

Genomic

  1. NW_025333737.1 Reference TTU_PhHast_1.1

    Range
    25876470..25890152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045836613.1 → XP_045692569.1  alpha-sarcoglycan isoform X1

  2. XM_045836615.1 → XP_045692571.1  alpha-sarcoglycan isoform X2

  3. XM_045836614.1 → XP_045692570.1  alpha-sarcoglycan isoform X1

  4. XM_045836612.1 → XP_045692568.1  alpha-sarcoglycan isoform X1

  5. XM_045836611.1 → XP_045692567.1  alpha-sarcoglycan isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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