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MATR3 matrin 3 [ Phyllostomus hastatus (greater spear-nosed bat) ]

Gene ID: 123810306, updated on 30-Mar-2024

Summary

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Gene symbol
MATR3
Gene description
matrin 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Phyllostomus hastatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Phyllostominae; Phyllostomus
Orthologs
human mouse all
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Genomic context

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See MATR3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current TTU_PhHast_1.1 (GCF_019186645.2) Unplaced Scaffold NW_025333611.1 (28553385..28605830, complement)

NW_025333611.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 23 member 1 Neighboring gene marginal zone B and B1 cell specific protein Neighboring gene poly(A) binding protein interacting protein 2 Neighboring gene small nucleolar RNA SNORA74 Neighboring gene 60S ribosomal protein L17-like Neighboring gene 60S ribosomal protein L15-like Neighboring gene SIL1 nucleotide exchange factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025333611 Unplaced Scaffold Reference TTU_PhHast_1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phyllostomus hastatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TTU_PhHast_1.1

Genomic

  1. NW_025333611.1 Reference TTU_PhHast_1.1

    Range
    28553385..28605830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045825929.1 → XP_045681885.1  matrin-3 isoform X1

    Conserved Domains (4) summary
    smart00451
    Location:847 → 882
    ZnF_U1; U1-like zinc finger
    COG5271
    Location:567 → 821
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 (RRM1) found in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 (RRM2) found in vertebrate matrin-3

  2. XM_045825968.1 → XP_045681924.1  matrin-3 isoform X3

  3. XM_045825959.1 → XP_045681915.1  matrin-3 isoform X2

    Conserved Domains (4) summary
    smart00451
    Location:799 → 834
    ZnF_U1; U1-like zinc finger
    COG5271
    Location:567 → 779
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 (RRM1) found in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 (RRM2) found in vertebrate matrin-3

  4. XM_045825909.1 → XP_045681865.1  matrin-3 isoform X1

    Conserved Domains (4) summary
    smart00451
    Location:847 → 882
    ZnF_U1; U1-like zinc finger
    COG5271
    Location:567 → 821
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 (RRM1) found in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 (RRM2) found in vertebrate matrin-3

  5. XM_045825911.1 → XP_045681867.1  matrin-3 isoform X1

    Conserved Domains (4) summary
    smart00451
    Location:847 → 882
    ZnF_U1; U1-like zinc finger
    COG5271
    Location:567 → 821
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 (RRM1) found in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 (RRM2) found in vertebrate matrin-3

  6. XM_045825914.1 → XP_045681870.1  matrin-3 isoform X1

    Conserved Domains (4) summary
    smart00451
    Location:847 → 882
    ZnF_U1; U1-like zinc finger
    COG5271
    Location:567 → 821
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 (RRM1) found in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 (RRM2) found in vertebrate matrin-3

  7. XM_045825939.1 → XP_045681895.1  matrin-3 isoform X1

    Conserved Domains (4) summary
    smart00451
    Location:847 → 882
    ZnF_U1; U1-like zinc finger
    COG5271
    Location:567 → 821
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 (RRM1) found in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 (RRM2) found in vertebrate matrin-3

  8. XM_045825921.1 → XP_045681877.1  matrin-3 isoform X1

    Conserved Domains (4) summary
    smart00451
    Location:847 → 882
    ZnF_U1; U1-like zinc finger
    COG5271
    Location:567 → 821
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 (RRM1) found in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 (RRM2) found in vertebrate matrin-3

  9. XM_045825997.1 → XP_045681953.1  matrin-3 isoform X6

    Conserved Domains (4) summary
    smart00451
    Location:461 → 496
    ZnF_U1; U1-like zinc finger
    COG5271
    Location:229 → 441
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd12714
    Location:60 → 135
    RRM1_MATR3; RNA recognition motif 1 (RRM1) found in vertebrate matrin-3
    cd12715
    Location:158 → 237
    RRM2_MATR3; RNA recognition motif 2 (RRM2) found in vertebrate matrin-3

  10. XM_045825987.1 → XP_045681943.1  matrin-3 isoform X5

  11. XM_045825978.1 → XP_045681934.1  matrin-3 isoform X4

    Conserved Domains (4) summary
    smart00451
    Location:510 → 545
    ZnF_U1; U1-like zinc finger
    COG5271
    Location:278 → 490
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd12714
    Location:109 → 184
    RRM1_MATR3; RNA recognition motif 1 (RRM1) found in vertebrate matrin-3
    cd12715
    Location:207 → 286
    RRM2_MATR3; RNA recognition motif 2 (RRM2) found in vertebrate matrin-3

  12. XM_045825949.1 → XP_045681905.1  matrin-3 isoform X1

    Conserved Domains (4) summary
    smart00451
    Location:847 → 882
    ZnF_U1; U1-like zinc finger
    COG5271
    Location:567 → 821
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd12714
    Location:398 → 473
    RRM1_MATR3; RNA recognition motif 1 (RRM1) found in vertebrate matrin-3
    cd12715
    Location:496 → 575
    RRM2_MATR3; RNA recognition motif 2 (RRM2) found in vertebrate matrin-3
Nucleotide Protein
Heading Accession and Version

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