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CAPN3 calpain 3 [ Phyllostomus hastatus (greater spear-nosed bat) ]

Gene ID: 123808805, updated on 30-Mar-2024

Summary

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Gene symbol
CAPN3
Gene description
calpain 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Phyllostomus hastatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Phyllostominae; Phyllostomus
Orthologs
human mouse all
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Genomic context

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See CAPN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current TTU_PhHast_1.1 (GCF_019186645.2) Unplaced Scaffold NW_025334033.1 (10351291..10398401)

NW_025334033.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene glucosidase alpha, neutral C Neighboring gene 40S ribosomal protein S17-like Neighboring gene uncharacterized LOC123808806 Neighboring gene zinc finger protein 106 Neighboring gene synaptosome associated protein 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025334033 Unplaced Scaffold Reference TTU_PhHast_1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phyllostomus hastatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TTU_PhHast_1.1

Genomic

  1. NW_025334033.1 Reference TTU_PhHast_1.1

    Range
    10351291..10398401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045823659.1 → XP_045679615.1  calpain-3 isoform X1

  2. XM_045823660.1 → XP_045679616.1  calpain-3 isoform X2

  3. XM_045823661.1 → XP_045679617.1  calpain-3 isoform X3

  4. XM_045823662.1 → XP_045679618.1  calpain-3 isoform X4

Nucleotide Protein
Heading Accession and Version

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